Articles on Metabolomics

This list of the articles written about Shimadzu products.

 
2017
Investigations in the possibility of early detection of colorectal cancer by gas chromatography/triple-quadrupole mass spectrometry
S Nishiumi, T Kobayashi, S Kawana, Y Unno, T Sakai, K Okamoto, Y Yamada, K Sudo, T Yamaji, Y Saito, Y Kanemitsu, NT Okita, H Saito, S Tsugane, T Azuma, N Ojima, M Yoshida
Oncotarget DOI: 10.18632/oncotarget.15081

Discovery of Metabolite Biomarkers for Acute Ischemic Stroke Progression
Peifang Liu, Ruiting Li, Anton A. Antonov, Lihua Wang, Wei Li, Yunfei Hua, Huimin Guo, Lijuan Wang, Peijia Liu, Lixia Chen, Yuan Tian, Fengguo Xu, Zunjian Zhang, Yulan Zhu, and Yin Huang
J. Proteome Res., Just Accepted Manuscript DOI: 10.1021/acs.jproteome.6b00779

2016
13C-metabolic flux analysis of human adenovirus infection: Implications for viral vector production
Nuno Carinhas, Alexey Koshkin, Daniel A.M. Pais, Paula M. Alves, Ana P. Teixeira
Biotechnology and Bioengineering DOI: 10.1002/bit.26063

Sensory and Flavor Chemistry Characteristics of Australian Beef: Influence of Intramuscular Fat, Feed, and Breed
Damian Frank, Alex Ball, Joanne Hughes, Raju Krishnamurthy, Udayasika Piyasiri, Janet Stark, Peter Watkins, and Robyn Warner
J. Agric. Food Chem., 2016, 64 (21), pp 4299-4311 DOI: 10.1021/acs.jafc.6b00160

Metabolic Profiling in Chinese Cabbage (Brassica rapa L. subsp. pekinensis) Cultivars Reveals that Glucosinolate Content Is Correlated with Carotenoid Content
Seung-A Baek, Young-Ho Jung, Sun-Hyung Lim, Sang Un Park, and Jae Kwang Kim
J. Agric. Food Chem., 2016, 64 (21), pp 4426-4434 DOI: 10.1021/acs.jafc.6b01323
LC-Q-TOF: Bruker

Evaluation of Palm Oil as a Suitable Vegetable Oil for Vitamin A Fortification Programs
Marc Pignitter, Natalie Hernler, Mathias Zaunschirm, Julia Kienesberger, Mark Manuel Somoza, Klaus Kraemer, and Veronika Somoza
Nutrients 2016, 8(6), 378; doi: 10.3390/nu8060378

The development of plasma pseudotargeted GC-MS metabolic profiling and its application in bladder cancer
Yang Zhou, Ruixiang Song, Zhensheng Zhang, Xin Lu, Zhongda Zeng, Chunxiu Hu, Xinyu Liu, Yanli Li, Jianguo Hou, Yinghao Sun, Chuanliang Xu, Guowang Xu
Analytical and Bioanalytical Chemistry September 2016, Volume 408, Issue 24, pp 6741-6749

Metabolic flux profiling of MDCK cells during growth and canine adenovirus vector production
Nuno Carinhas, Daniel A. M. Pais, Alexey Koshkin, Paulo Fernandes, Ana S. Coroadinha, Manuel J. T. Carrondo, Paula M. Alves, and Ana P. Teixeiraa
Sci Rep. 2016; 6: 23529. doi: 10.1038/srep23529

Multiple roles of lactic acid bacteria microflora in the formation of marker flavour compounds in traditional chinese paocai
Nan Zhao, Chuchu Zhang, Qin Yang, Bo Yang, Wenwei Lu, Dongyao Li, Xiaoming Liu, Fengwei Tian, Hao Zhang and Wei Chen
RSC Adv., 2016,6, 89671-89678 DOI: 10.1039/C6RA12474G

Prediction of Periodontal Inflammation via Metabolic Profiling of Saliva
M. Kuboniwa, A. Sakanaka, E. Hashino, T. Bamba, E. Fukusaki, A. Amano
Journal of Dental Research 2016, Vol. 95(12) 1381-1386 DOI: 10.1177/0022034516661142

2-Aminobutyric acid modulates glutathione homeostasis in the myocardium
Yasuhiro Irino, Ryuji Toh, Manabu Nagao, Takeshige Mori, Tomoyuki Honjo, Masakazu Shinohara, Shigeyasu Tsuda, Hideto Nakajima, Seimi Satomi-Kobayashi, Toshiro Shinke, Hidekazu Tanaka, Tatsuro Ishida, Okiko Miyata, and Ken-ichi Hirata
Sci Rep. 2016; 6: 36749.

The Karlsruhe Metabolomics and Nutrition (KarMeN) Study: Protocol and Methods of a Cross-Sectional Study to Characterize the Metabolome of Healthy Men and Women
Achim Bub, Anita Kriebel, Dipl oec throph (FH), Claudia Dorr, Susanne Bandt, Manuela Rist, Alexander Roth, Eva Hummel, Sabine Kulling, Ingrid Hoffmann, and Bernhard Watzl,
JMIR Res Protoc. 2016 Jul-Sep; 5(3): e146.

A Simultaneous Metabolic Profiling and Quantitative Multimetabolite Metabolomic Method for Human Plasma Using Gas-Chromatography Tandem Mass Spectrometry
Otto I. Savolainen, Ann-Sofie Sandberg, and Alastair B. Ross
J. Proteome Res., 2016, 15 (1), pp 259-265 DOI: 10.1021/acs.jproteome.5b00790

Herring and chicken/pork meals lead to differences in plasma levels of TCA intermediates and arginine metabolites in overweight and obese men and women
Andrew Vincent, Otto I. Savolainen, Partho Sen, Nils-Gunnar Carlsson, Annette Almgren, Helen Lindqvist, Mads Vendelbo Lind, Ingrid Undeland, Ann-Sofie Sandberg, Alastair B. Ross
Mol. Nutr. Food Res.. doi: 10.1002/mnfr.201600400

Nicotinamide benefits both mothers and pups in two contrasting mouse models of preeclampsia
Feng Li, Tomofumi Fushima, Gen Oyanagi, H. W. Davin Townley-Tilson, Emiko Satob, Hironobu Nakada, Yuji Oe, John R. Hagamana, Jennifer Wildera, Manyu Li, Akiyo Sekimoto, Daisuke Saigusa, Hiroshi Sato, Sadayoshi Ito, J. Charles Jennette, Nobuyo Maeda, S. Ananth Karumanchi, Oliver Smithies, and Nobuyuki Takahashi
Proc Natl Acad Sci U S A. 2016 Nov 22;113(47):13450-13455.

GC-MS/MS survey of collision-induced dissociation of tert-butyldimethylsilyl-derivatized amino acids and its application to 13C-metabolic flux analysis of Escherichia coli central metabolism
Nobuyuki Okahashi, Shuichi Kawana, Junko Iida, Hiroshi Shimizu, Fumio Matsuda
Analytical and Bioanalytical Chemistry September 2016, Volume 408, Issue 22, pp 6133-6140

Metabolome analysis reveals the effect of carbon catabolite control on the poly(γ-glutamic acid) biosynthesis of Bacillus licheniformis ATCC 9945
Hitoshi Mitsunaga, Lena Meissner, Thomas Palmen, Takeshi Bamba, Jochen Buchs, Eiichiro Fukusaki
Journal of Bioscience and Bioengineering Volume 121, Issue 4, April 2016, Pages 413-419

Plasma Metabolites Predict Severity of Depression and Suicidal Ideation in Psychiatric Patients-A Multicenter Pilot Analysis
Daiki Setoyama, Takahiro A. Kato, Ryota Hashimoto, Hiroshi Kunugi, Kotaro Hattori, Kohei Hayakawa, Mina Sato-Kasai, Norihiro Shimokawa, Sachie Kaneko, Sumiko Yoshida, Yu-ichi Goto, Yuka Yasuda, Hidenaga Yamamori, Masahiro Ohgidani, Noriaki Sagata, Daisuke Miura, Dongchon Kang, Shigenobu Kanba
PLoS One. 2016 http://dx.doi.org/10.1371/journal.pone.0165267

Anionic metabolite biosynthesis enhanced by potassium under dark, anaerobic conditions in cyanobacteria
Sakiko Ueda, Yuhki Kawamura, Hiroko Iijima, Mitsuharu Nakajima, Tomokazu Shirai, Mami Okamoto, Akihiko Kondo, Masami Yokota Hirai, and Takashi Osanaia
Sci Rep. 2016; 6: 32354. doi: 10.1038/srep32354

LC-MS/MS-based metabolome analysis detected changes in the metabolic profiles of small and large intestinal adenomatous polyps in ApcMin/+ mice
Makoto Suzuki, Shin Nishiumi, Takashi Kobayashi, Takeshi Azuma, Masaru Yoshida
Metabolomics April 2016, DOI: 10.1007/s11306-016-0988-7

Myoferlin regulates cellular lipid metabolism and promotes metastases in triple-negative breast cancer
A Blomme, B Costanza, P de Tullio, M Thiry, G Van Simaeys, S Boutry, G Doumont, E Di Valentin, T Hirano, T Yokobori, S Gofflot, O Peulen, A Bellahcene, F Sherer, C Le Goff, E Cavalier, A Mouithys-Mickalad, F Jouret, P G Cusumano, E Lifrange, R N Muller, S Goldman, P Delvenne, E De Pauw, M Nishiyama, V Castronovo and A Turtoi
Oncogene , (24 October 2016) | doi:10.1038/onc.2016.369

Metabolomics profiling of the free and total oxidised lipids in urine by LC-MS/MS: application in patients with rheumatoid arthritis
Junzeng Fu, Johannes C. Schoeman, Amy C. Harms, Herman A. van Wietmarschen, Rob J. Vreeken, Ruud Berger, Bart V. J. Cuppen, Floris P. J. G. Lafeber, Jan van der Greef, Thomas Hankemeier
Analytical and Bioanalytical Chemistry September 2016, Volume 408, Issue 23, pp 6307-6319

Intact Endogenous Metabolite Analysis of Mice Liver by Probe Electrospray Ionization/Triple Quadrupole Tandem Mass Spectrometry and Its Preliminary Application to in Vivo Real-Time Analysis
Kei Zaitsu, Yumi Hayashi, Tasuku Murata, Tomomi Ohara, Kenta Nakagiri, Maiko Kusano, Hiroki Nakajima, Tamie Nakajima, Tetsuya Ishikawa, Hitoshi Tsuchihashi, and Akira Ishii
DOI: 10.1021/acs.analchem.5b04046

Modulation of the cellular content of metabolites in adipocytes by insulin
Qiao Y, Tomonaga S, Matsui T, Funaba M.
Mol Cell Endocrinol. 2016 Jan 23. pii: S0303-7207(16)30017-X. doi: 10.1016/j.mce.2016.01.017.

A Novel Strategy for Large-Scale Metabolomics Study by Calibrating Gross and Systematic Errors in Gas Chromatography Mass Spectrometry
Yanni Zhao, Zhiqiang Hao, Chunxia Zhao, Jieyu Zhao, Junjie Zhang, Yanli Li, Lili Li, Xin Huang, Xiaohui Lin, Zhongda Zeng, Xin Lu, and Guowang Xu
Analytical chemistry 2016 (in press)

Quantitative target analysis and kinetic profiling of acyl-CoAs reveal the rate-limiting step in cyanobacterial 1-butanol production
Shingo Noguchi, Sastia P Putri, Ethan I Lan, Walter A Lavina, Yudai Dempo, Takeshi Bamba, James C Liao, Eiichiro Fukusaki Original Article Metabolomics February 2016, 12:26
  2015
Investigating oxalate biosynthesis in the wooddecaying fungus Gloeophyllum trabeum using 13C metabolic flux analysis
Liangpeng Zhuang, Weihua Guo, Makoto Yoshida,c Xueyang Feng and Barry Goodell
RSC Advances RSC Adv., 2015,5, 104043-104047 DOI: 10.1039/C5RA19203J

Profiling of plasma metabolites in canine oral melanoma using gas chromatography-mass spectrometry
Kawabe M, Baba Y, Tamai R, Yamamoto R, Komori M, Mori T, Takenaka S
J Vet Med Sci. 2015 Aug;77(8):1025-8. doi: 10.1292/jvms.14-0641.

Nano-scale liquid chromatography coupled to tandem mass spectrometry using the multiple reaction monitoring mode based quantitative platform for analyzing multiple enzymes associated with central metabolic pathways of Saccharomyces cerevisiae using ultra fast mass spectrometry
Fumio Matsuda, Tairo Ogura, Atsumi Tomita, Ichiro Hirano, Hiroshi Shimizu
J Biosci Bioeng. 2015 Jan;119(1):117-20. doi: 10.1016/j.jbiosc.2014.06.010.

Rikkunshito Ameliorates Cancer Cachexia Partly through Elevation of Glucarate in Plasma.
Ohbuchi K, Nishiumi S, Fujitsuka N, Hattori T, Yamamoto M, Inui A, Azuma T, Yoshida M
Evid Based Complement Alternat Med. 2015;2015:871832. doi: 10.1155/2015/871832.

Multi-Component Profiling of Trace Volatiles in Blood by Gas Chromatography/Mass Spectrometry with Dynamic Headspace Extraction
Shoji Kakuta, Toshiyuki Yamashita, Shin Nishiumi, Masaru Yoshida, Eiichiro Fukusaki, and Takeshi Bamba
Mass Spectrometry Vol.4 (2015) No.1 p.A0034

Metabolome disruption of the rat cerebrum induced by the acute toxic effects of the synthetic cannabinoid MAM-2201
Kei Zaitsu, Yumi Hayashi, Kei Suzuki, Hiroshi Nakayama, Nanpei Hattori, Rina Takahara, Maiko Kusano, Hitoshi Tsuchihashi, Akira Ishii
Life Sciences 137 (2015) 49-55

Application of gas chromatography/flame ionization detector-based metabolite fingerprinting for authentication of Asian palm civet coffee (Kopi Luwak)
Udi Jumhawan, Sastia Prama Putri, Yusianto,Takeshi Bamba, and Eiichiro Fukusaki
Arch Biochem Biophys. 2010 Dec 15;504(2):221-7. doi: 10.1016/j.abb.2010.09.001.

A preliminary study on postmortem interval estimation of suffocated rats by GC-MS/MS-based plasma metabolic profiling
Takako Sato, Kei Zaitsu, Kento Tsuboi, Masakatsu Nomura, Maiko Kusano, Noriaki Shima, Shuntaro Abe , Akira Ishii, Hitoshi Tsuchihashi, Koichi Suzuki
Anal Bioanal Chem DOI: 10.1007/s00216-015-8584-7.

2014
High-sensitivity detection of short-chain fatty acids in porcine ileal, cecal, portal and abdominal blood by gas chromatography-mass spectrometry
Takamitsu TSUKAHARA, Noriko MATSUKAWA, Shozo TOMONAGA, Ryo INOUE, Kazunari USHIDA and Kuniyasu OCHIAI
Animal Science Journal (2014) 85, 494-498

Profiling of Serum Metabolites in Canine Lymphoma Using Gas Chromatography Mass Spectrometry
Reo TAMAI, Masaru FURUYA, Shingo HATOYA, Hideo AKIYOSHI, Ryohei YAMAMOTO,Yoshiaki KOMORI, Shin-ichi YOKOI, Kenichiro TANI, Yuji HIRANO, Masayuki KOMORI and Shigeo TAKENAKA
J. Vet. Med. Sci. 76(11): 1513-1518, 2014

A novel gas chromatography mass spectrometry-based serum diagnostic and assessment approach to ulcerative colitis.
Kohashi M, Nishiumi S, Ooi M, Yoshie T, Matsubara A, Suzuki M, Hoshi N, Kamikozuru K, Yokoyama Y, Fukunaga K, Nakamura S, Azuma T, Yoshida M.
J. Crohns Colitis. 2014 Sep;8(9):1010-21. doi: 10.1016/j.crohns.2014.01.024.

Supercritical fluid extraction as a preparation method for mass spectrometry of dried blood spots.
Matsubara A, Izumi Y, Nishiumi S, Suzuki M, Azuma T, Fukusaki E, Bamba T, Yoshida M
J. Chromatogr B Analyt Technol Biomed Life Sci. 2014 Oct 15;969:199-204. doi: 10.1016/j.jchromb.2014.08.013.

Metabolic profiling of urine and blood plasma in rat models of drug addiction on the basis of morphine, methamphetamine, and cocaine-induced conditioned place preference.
Zaitsu K, Miyawaki I, Bando K, Horie H, Shima N, Katagi M, Tatsuno M, Bamba T, Sato T, Ishii A, Tsuchihashi H, Suzuki K, Fukusaki E
Anal Bioanal Chem. 2014 Feb;406(5):1339-54. doi: 10.1007/s00216-013-7234-1.

Metabolic Profiling of Retrograde Pathway Transcription Factors Rtg1 and RtgM3 Knockout Yeast
Zanariah Hashim, Yukio Mukai, Takeshi Bamba and Eiichiro Fukusaki
Metabolites 2014, 4, 580-598; doi: 10.3390/metabo4030580.

Analysis of the correlation between dipeptides and taste differences among soy sauces by using metabolomics-based component profiling
Shinya Yamamoto, Kazuki Shiga, Yukako Kodama,Miho Imamura, Riichiro Uchida, Akio Obata, Takeshi Bamba, and Eiichiro Fukusaki
Journal of Bioscience and Bioengineering VOL. 118 No. 1, 56e63, 2014

Gas chromatography/mass spectrometry based component profiling and quality prediction for Japanese sake
Natsuki Mimura, Atsuko Isogai, Kazuhiro Iwashita,Takeshi Bamba, and Eiichiro Fukusaki
Journal of Bioscience and Bioengineering VOL. 118 No. 4, 406e414, 2014

Novel Strategy for Non-Targeted Isotope-Assisted Metabolomics by Means of Metabolic Turnover and Multivariate Analysis
Yasumune Nakayama, Yoshihiro Tamada, Hiroshi Tsugawa, Takeshi Bamba and Eiichiro Fukusaki
Metabolites 2014, 4, 722-739; doi: 10.3390/metabo4030722.
  2013
Gas Chromatography-Mass Spectrometry-Based Metabolic Profiling of Cerebrospinal Fluid from Epileptic Dogs
Tetsuya HASEGAWA, Maho SUMITA, Yusuke HORITANI, Reo TAMAI, Katsuhiro TANAKA, Masayuki KOMORI and Shigeo TAKENAKA
J. Vet Med Sci. 2014 Apr;76(4):517-22. Epub 2013 Dec 13.

Metabolomic investigation of pathogenesis of myxosporean emaciation disease of tiger puffer fish Takifugu rubripes
H Kodama, K Otani, T Iwasaki, S Takenaka, Y Horitani and H Togase
Journal of Fish Diseases 2013

A novel serum metabolomics-based diagnostic approach to pancreatic cancer
Kobayashi T, Nishiumi S, Ikeda A, Yoshie T, Sakai A, Matsubara A, Izumi Y, Tsumura H, Tsuda M, Nishisaki H, Hayashi N, Kawano S, Fujiwara Y, Minami H, Takenawa T, Azuma T, Yoshida M
Cancer Epidemiol Biomarkers Prev. 2013 Apr;22(4):571-9. doi: 10.1158/1055-9965.EPI-12-1033.

Monitoring the ripening process of Cheddar cheese based on hydrophilic component profiling using gas chromatography-mass spectrometry
H. Ochi , Y. Sakai , H. Koishihara , F. Abe , T. Bamba , and E. Fukusaki
J. Dairy Sci. 96 :7427-7441

Selection of Discriminant Markers for Authentication of Asian Palm Civet Coffee (Kopi Luwak): A Metabolomics Approach
Udi Jumhawan, Sastia Prama Putri, Yusianto, Erly Marwani, Takeshi Bamba, and Eiichiro Fukusaki
J. Agric. Food Chem. 2013, 61, 7994-8001

2012
A novel serum metabolomics-based diagnostic approach for colorectal cancer
Nishiumi S, Kobayashi T, Ikeda A, Yoshie T, Kibi M, Izumi Y, Okuno T, Hayashi N, Kawano S, Takenawa T, Azuma T, Yoshida M
PLoS One. 2012;7(7):e40459. doi: 10.1371/journal.pone.0040459.

2011
GCMS-based metabolomic study in mice with colitis induced by dextran sulfate sodium
Shiomi Y, Nishiumi S, Ooi M, Hatano N, Shinohara M, Yoshie T, Kondo Y, Furumatsu K, Shiomi H, Kutsumi H, Azuma T, Yoshida M
Inflamm Bowel Dis. 2011 Nov;17(11):2261-74. doi: 10.1002/ibd.21616.

GC/MS-based profiling of amino acids and TCA cycle-related molecules in ulcerative colitis
Ooi M, Nishiumi S, Yoshie T, Shiomi Y, Kohashi M, Fukunaga K, Nakamura S, Matsumoto T, Hatano N, Shinohara M, Irino Y, Takenawa T, Azuma T, Yoshida M
Inflamm Res. 2011 Sep;60(9):831-40. doi: 10.1007/s00011-011-0340-7.

2010
Activation of the aryl hydrocarbon receptor induces hepatic steatosis via the upregulation of fatty acid transport
Kawano Y, Nishiumi S, Tanaka S, Nobutani K, Miki A, Yano Y, Seo Y, Kutsumi H, Ashida H, Azuma T, Yoshida M
Arch Biochem Biophys. 2010 Dec 15;504(2):221-7. doi: 10.1016/j.abb.2010.09.001.
 

 

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