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User Benefits Application News Simultaneous measurement of positive and negative ions enables the analysis of 19 explosives in about 5 minutes. Thermally labile explosives can be detected with high sensitivity under optimized MS conditions. Regioisomers of nitrobenzenes can be separated under optimal LC conditions. Rapid LC-MS/MS Analysis of 19 Explosives in Soil Triple Quadrupole Liquid Chromatograph Mass Spectrometer Introduction Explosives are defined as chemical substances that decompose rapidly and release high-temperature, high-pressure gases. There are many types of explosives, including nitramines, nitrobenzenes, nitrates, and peroxides. While these are widely used for military and industrial purposes, they may remain in the environment due to accidental leakage or illegal use. In particular, soil tends to retain explosives and their residues. The analysis of these substances is useful for evidence collection in criminal investigations and for assessing environmental impacts. Traditionally, GC-MS has been widely used for the analysis of explosives. However, some compounds are prone to thermal decomposition during vaporization. Therefore, LC-MS/MS methods are increasingly being applied to such analyses. In this study, 19 explosives listed in Table 1, including nitramine, nitrobenzene, nitrate ester, and peroxide, were analyzed in soil using LCMS-8060RX (Fig. 1). Calibration standards were prepared by diluting a mixed solution of each standard with methanol to obtain concentrations equivalent to 1.0, 5.0, 10, 50, 100, 500, and 1,000 ng/mL in soil samples. The extraction method for soil samples was based on EPA 8330B 1) (Fig. 2). First, the dried soil samples were passed through a 10-mesh sieve to remove coarse particles. The samples were weighed in 10-g portions, and 10 mL of methanol was added to each. As an internal standard (I.S.), 10 µL of a 1,2-DNB solution (50 µg/mL) was added to each sample, and a mixed solution of 19 explosives (10 µg/mL) was also added for validation. The samples were then mixed with a vortex mixer for 1 minute, shaken for 10 minutes at room temperature using a shaker, and centrifuged. The resulting supernatant was collected and filtered through a 0.45 µm filter. The filtrate was concentrated under a nitrogen stream and dissolved in 1 mL of methanol to prepare the analytical samples. Sample Preparation & Extraction Abbreviation Compound name Group Formula M.W.(monoisotopic mass) RDX Hexahydro-1,3,5-trinitro-1,3,5-triazine Nitramine C3H6N6O6 222.03 HMX Octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine Nitramine C4H8N8O8 296.05 NQ Nitroguanidine Nitramine CH4N4O2 104.03 TNT 2,4,6-Trinitrotoluene Nitrobenzene C7H5N3O6 227.02 4A-2,6-DNT 4-Amino-2,6-Dinitrotoluene Nitrobenzene C7H7N3O4 197.04 2A-4,6-DNT 2-Amino-4,6-Dinitrotoluene Nitrobenzene C7H7N3O4 197.04 2,4-DNT 2,4-Dinitrotoluene Nitrobenzene C7H6N2O4 182.03 2,6-DNT 2,6-Dinitrotoluene Nitrobenzene C7H6N2O4 182.03 TNB 1,3,5-Trinitrobenzene Nitrobenzene C6H3N3O6 213.00 1,3-DNB 1,3-Dinitrobenzene Nitrobenzene C6H4N2O4 168.02 3,5-DNA 3,5-Dinitroaniline Nitrobenzene C6H5N3O4 183.03 Tetryl 2,4,6-N-tetranitro-N-methylaniline Nitrobenzene C7H5N5O8 287.01 PA 2,4,6-Trinitrophenol (Picric acid) Nitrobenzene C6H3N3O7 229.00 PETN Pentaerythritol tetranitrate Nitrate ester C5H8N4O12 316.01 NG Nitroglycerin Nitrate ester C3H5N3O9 227.00 1,2-DNG 1,2-Dinitroglycerin Nitrate ester C3H6N2O7 182.02 1-MNG 1-Mononitroglycerin Nitrate ester C3H7NO5 137.03 TATP Triacetone triperoxide Peroxide C9H18O6 222.11 HMTD Hexamethylene triperoxide diamine Peroxide C6H12N2O6 208.07 1,2-DNB 1,2-Dinitrobenzene I.S. (Nitrobenzene) C6H4N2O4 168.02 Dried Soil Samples Weigh 10 g Collect Supernatant Analyze samples Filter through 10-mesh sieve Add 10 µL mixed std solution (10 µg/mL) Add 10 µL of I.S., 1,2-DNB (50 µg/mL) Extract (10 mL MeOH) Vortex 1 min Shake 10 min Centrifuge Filter 0.45 µm Concentrate under N 2 stream Dissolve(1 mL MeOH) Table 1 List of Target Compounds Fig. 1 Nexera X3 + LCMS-8060RX Fig. 2 Workflow for Soil Sample Pretreatment Toshinari Ishii 1 , Yuki Sakamoto 1 , Maiko Kusano 2 , Masaya Fujishiro 2 , Taka-aki Matsuyama 2 1 Shimadzu Corporation, 2 Department of Legal Medicine, SHOWA Medical University
Application News Analytical Conditions Table 2 Nexera and LCMS-8060RX Conditions [HPLC conditions] (Nexera X3) Column : Shim-pack Velox Biphenyl (100 mm × 2.1 mm I.D., 2.7 µm) P/N: 227-32015-03 Column oven : 30 ˚C Solvent A Solvent B : : 5 mM ammonium formate + 0.1 % formic acid in water MeOH Flow rate : 0.3 mL/min Time Program (%B) : 60 % (0-1.5 min) → 90 % (5.0-6.0 min) → 60 % (6.0-8.0 min) Injection volume : 2 µL [MS conditions] (LCMS-8060RX) Ionization : APCI, Positive/Negative mode Nebulizing gas flow : 4 L/min Drying gas flow : 5 L/min DL temp. : 150 ˚C Heat block temp. : 200 ˚C Interface temp. : 270 ˚C 0.50 0.75 1.00 1.25 1.50 1.75 2.00 2.25 2.50 2.75 3.00 3.25 3.50 3.75 4.00 4.25 4.50 4.75 5.00 min NQ 1-MNG 1,2-DNG HMX PA RDX HMTD NG 3,5-DNA 4A-2,6DNT 1,2-DNB (I.S.) 2A-4,6-DNT PETN 1,3-DNB TATP 2,6-DNT Tetryl 2,4-DNT TNB TNT Results Compound name Retention time (min) Polarity Precursor ion (m/z) Quantifier ion (m/z) Reference ion1 (m/z) Reference ion2 (m/z) NQ 0.789 Positive [M+H] + = 105.0 > 59.0(CE -14 V) 43.0(CE -24 V) - 1-MNG 0.840 Negative [M+CHCOO] - = 182.0 > 45.0 (CE 22 V) 62.0 (CE 6 V) - 1,2-DNG 1.093 Negative [M+CHCOO] - = 227.0 > 45.0 (CE 10 V) 62.0 (CE 6 V) - HMX 1.164 Negative [M+CHCOO] - = 341.0 > 147.1 (CE 9 V) 174.2 (CE 10 V) 100.0(CE 10 V) PA 1.252 Negative [M-H] - = 228.0 > 182.0 (CE 18 V) 198.3 (CE 16 V) 63.0(CE 26 V) RDX 1.330 Negative [M+CHCOO] - = 267.0 > 46.0 (CE 8 V) 92.0 (CE 6 V) - HMTD 1.376 Positive [M+H] + = 209.1 > 88.0(CE -12 V) 145.1 (CE -8 V) - NG 1.854 Negative [M] - = 227.0 > 62.0 (CE 10 V) 45.0 (CE 8 V) - 3,5-DNA 2.091 Negative [M-H] - = 182.0 > 94.0 (CE 20 V) 124.0 (CE 16 V) 152.1(CE 17 V) 4A-2,6-DNT 2.444 Negative [M-H] - = 196.0 > 119.1 (CE 17 V) 149.0 (CE 17 V) - 1,2-DNB 2.549 Negative [M] - = 168.0 > 138.0 (CE 14 V) 107.9 (CE 15 V) - 2A-4,6-DNT 2.583 Negative [M-H] - = 196.0 > 136.0 (CE 28 V) 119.1 (CE 17 V) - PETN 3.357 Negative [M] - = 316.0 > 62.0 (CE 30 V) 46.0 (CE 24 V) - 1,3-DNB 3.452 Negative [M] - = 168.0 > 138.0 (CE 14 V) 107.9 (CE 15 V) - TATP 3.766 Positive [M+H] + = 240.0 > 43.0(CE -18 V) 74.0 (CE -8 V) - 2,6-DNT 3.894 Negative [M] - = 182.0 > 152.1 (CE 12 V) 45.9 (CE 24 V) - Tetryl 4.246 Negative [M+CHCOO] - = 288.0 > 194.0 (CE 12 V) 212.0 (CE 10 V) 207.0(CE 22 V) 2,4-DNT 4.368 Negative [M] - = 182.0 > 45.9 (CE 24 V) 152.1 (CE 12 V) 137.1(CE 12 V) TNB 4.411 Negative [M] - = 213.0 > 183.1(CE 13 V) 95.0 (CE 23 V) 125.0(CE 19 V) TNT 4.801 Negative [M-H] - = 226.0 > 196.1(CE 12 V) 76.0 (CE 22 V) 88.0(CE 18 V) The LC-MS/MS analytical conditions are summarized in Table 2, and the retention times and transitions for each compound are listed in Table 3. It was found that peroxides and nitramines tend to form positive ions, whereas the other compounds tend to form negative ions. Since nitrate esters and peroxides are particularly prone to thermal decomposition, it was necessary to set the MS interface temperature low. On the other hand, nitramine peaks tended to tail at interface temperatures below 250 ˚C. Therefore, the interface temperature was set at 270 ˚C to achieve sufficient sensitivity and acceptable peak shapes for each compound. Furthermore, the LC conditions were optimized to separate nitrobenzenes, which include many regioisomers, within a short analysis time. The MRM chromatograms are shown in Fig. 3. Standard solutions diluted with methanol were prepared at concentrations equivalent to 1.0, 5.0, 10, 50, 100, 500, and 1,000 ng/mL, and linearity was evaluated. PETN and TATP were detectable at 5.0 ng/mL, whereas the other 17 compounds were detectable at 1.0 ng/mL (Fig. 4). The calibration curves were weighted by 1/C. The correlation coefficients (R) for all compounds were 0.995 or higher, indicating good linearity (Table 4). To evaluate intra-day accuracy and repeatability, soil samples spiked to 10 ng/mL for each compound were analyzed (n = 5). Representative MRM chromatograms are shown in Fig. 5. Accuracy ranged from 70% to 120% (Fig. 6), and %RSD values, which indicate repeatability, were 9.1% or less. These results indicate that the proposed method provides sufficient linearity, accuracy, and repeatability for the analysis of explosives in soil. Fig. 3 MRM Chromatograms of the 19 Target Compounds and the Internal Standard Table 3 Retention Times and MRM Transitions of Target Compounds
Application News NQ ( 1.0 ng/mL( 1-MNG ( 1.0 ng/mL( 1,2-DNG ( 1.0 ng/mL( HMX ( 1.0 ng/mL( PA ( 1.0 ng/mL( RDX ( 1.0 ng/mL( NG ( 1.0 ng/mL( 3,5-DNA ( 1.0 ng/mL( 4A-2,6-DNT ( 1.0 ng/mL( 2A-4,6-DNT ( 1.0 ng/mL( 1,2-DNB (I.S. 50 ng/mL) TATP (5.0 ng/mL) HMTD ( 1.0 ng/mL( PETN ( 5.0 ng/mL( 1,3-DNB (1.0 ng/mL) 2,4-DNT (1.0 ng/mL) 2,6-DNT (1.0 ng/mL) Tetryl (1.0 ng/mL) TNB (1.0 ng/mL) TNT (1.0 ng/mL) Fig. 4 MRM Chromatograms at the Lowest Calibration Concentrations Q 105.00>59.00 (+) R1 105.00>43.00 (+) 0.6 0.8 1.0 0.0e0 1.0e3 2.0e3 3.0e3 4.0e3 Q 182.00>45.00 (-) R1 182.00>62.00 (-) 0.6 0.8 1.0 0.0e0 2.0e2 4.0e2 6.0e2 Q 227.00>45.00 (-) R1 227.00>62.00 (-) 0.8 1.0 1.2 0.0e0 2.5e2 5.0e2 7.5e2 1.0e3 Q 341.00>147.10 (-) R1 341.00>174.20 (-) R2 341.00>100.00 (-) 1.0 1.2 1.4 0.0e0 2.0e3 4.0e3 6.0e3 Q 228.00>182.00 (-) R1 228.00>198.30 (-) R2 228.00>63.00 (-) 1.0 1.2 1.4 0.0e0 2.0e3 4.0e3 Q 267.00>46.00 (-) R1 267.00>92.00 (-) 1.2 1.4 1.6 0.0e0 2.0e3 4.0e3 6.0e3 8.0e3 Q 209.10>88.00 (+) R1 209.10>145.10 (+) 1.2 1.4 1.6 0.0e0 1.0e3 2.0e3 Q 227.00>62.00 (-) R1 227.00>45.00 (-) 1.6 1.8 2.0 0.0e0 5.0e1 1.0e2 1.5e2 Q 182.00>94.00 (-) R1 182.00>124.00 (-) R2 182.00>152.00 (-) 1.8 2.0 2.2 0.0e0 2.0e3 4.0e3 Q 196.00>119.10 (-) R1 196.00>149.00 (-) 2.2 2.4 2.6 0.0e0 2.0e2 4.0e2 6.0e2 ISTD 168.00>138.00 (-) R1 168.00>107.90 (-) 2.4 2.6 2.8 0.0e0 1.0e5 2.0e5 3.0e5 Q 196.00>136.00 (-) R1 196.00>119.10 (-) 2.4 2.6 2.8 0.0e0 2.0e2 4.0e2 6.0e2 Q 316.00>62.00 (-) Q 168.00>138.00 (-) R1 168.00>107.90 (-) 3.2 3.4 3.6 0.0e0 1.0e3 2.0e3 3.0e3 Q 240.00>43.00 (+) R1 240.00>74.00 (+) 3.6 3.8 4.0 0.0e0 1.0e2 2.0e2 3.0e2 Q 182.00>152.10 (-) R1 182.00>45.90 (-) 3.6 3.8 4.0 0.0e0 2.0e3 4.0e3 Q 288.00>194.00 (-) R1 288.00>212.00 (-) R2 288.00>207.00 (-) 4.0 4.2 4.4 0.0e0 5.0e3 1.0e4 Q 182.00>45.90 (-) R1 182.00>152.10 (-) R2 182.00>137.10 (-) 4.2 4.4 4.6 0.0e0 5.0e2 1.0e3 1.5e3 Q 213.00>183.10 (-) R1 213.00>95.00 (-) R2 213.00>125.00 (-) 4.2 4.4 4.6 0.0e0 1.0e4 2.0e4 3.0e4 4.0e4 Q 226.00>196.10 (-) R1 226.00>76.00 (-) R2 226.00>88.00 (-) 4.6 4.8 5.0 0.0e0 2.0e2 4.0e2 6.0e2 8.0e2 3.2 3.4 3.6 0.0e0 2.0e2 4.0e2 6.0e2
Application News NQ 1-MNG 1,2-DNG HMX PA RDX NG 3,5-DNA 4A-2,6-DNT 2A-4,6-DNT 1,2-DNB (I.S. 50 ng/mL) TATP HMTD PETN 1,3-DNB 2,4-DNT 2,6-DNT Tetryl TNB TNT Q 105.00>59.00 (+) R1 105.00>43.00 (+) Q 182.00>45.00 (-) R1 182.00>62.00 (-) Q 227.00>45.00 (-) R1 227.00>62.00 (-) Q 341.00>147.10 (-) R1 341.00>174.20 (-) R2 341.00>100.00 (-) Q 228.00>182.00 (-) R1 228.00>198.30 (-) R2 228.00>63.00 (-) Q 267.00>46.00 (-) R1 267.00>92.00 (-) Q 209.10>88.00 (+) R1 209.10>145.10 (+) Q 227.00>62.00 (-) R1 227.00>45.00 (-) Q 182.00>94.00 (-) R1 182.00>124.00 (-) R2 182.00>152.00 (-) Q 196.00>119.10 (-) R1 196.00>149.00 (-) ISTD 168.00>138.00 (-) R1 168.00>107.90 (-) Q 196.00>136.00 (-) R1 196.00>119.10 (-) Q 316.00>62.00 (-) Q 168.00>138.00 (-) R1 168.00>107.90 (-) Q 240.00>43.00 (+) R1 240.00>74.00 (+) Q 182.00>152.10 (-) R1 182.00>45.90 (-) Q 288.00>194.00 (-) R1 288.00>212.00 (-) R2 288.00>207.00 (-) Q 182.00>45.90 (-) R1 182.00>152.10 (-) R2 182.00>137.10 (-) Q 213.00>183.10 (-) R1 213.00>95.00 (-) R2 213.00>125.00 (-) Q 226.00>196.10 (-) R1 226.00>76.00 (-) R2 226.00>88.00 (-) 0.6 0.8 1.0 0.0e0 5.0e4 1.0e5 0.6 0.8 1.0 0.0e0 5.0e3 1.0e4 1.5e4 0.8 1.0 1.2 0.0e0 1.0e4 2.0e4 3.0e4 1.0 1.2 1.4 0.0e0 5.0e4 1.0e5 1.5e5 1.0 1.2 1.4 0.0e0 2.5e4 5.0e4 7.5e4 1.2 1.4 1.6 0.0e0 1.0e5 2.0e5 1.2 1.4 1.6 0.0e0 5.0e3 1.0e4 1.6 1.8 2.0 0.0e0 1.0e3 2.0e3 3.0e3 1.8 2.0 2.2 0.0e0 5.0e4 1.0e5 2.2 2.4 2.6 0.0e0 5.0e3 1.0e4 2.4 2.6 2.8 0.0e0 2.0e5 4.0e5 2.4 2.6 2.8 0.0e0 5.0e3 1.0e4 3.2 3.4 3.6 0.0e0 2.0e3 3.2 3.4 3.6 0.0e0 2.0e4 4.0e4 3.6 3.8 4.0 0.0e0 5.0e2 1.0e3 3.6 3.8 4.0 0.0e0 5.0e4 1.0e5 4.0 4.2 4.4 0.0e0 1.0e5 2.0e5 3.0e5 4.2 4.4 4.6 0.0e0 1.0e4 2.0e4 3.0e4 4.2 4.4 4.6 0.0e0 2.5e5 5.0e5 7.5e5 4.6 4.8 5.0 0.0e0 5.0e3 1.0e4 1.5e4 Fig. 5 MRM Chromatograms of Soil Samples Spiked with the Mixed Standard Solution (10 ng/mL)
Application News www.shimadzu.com/an/ Shimadzu Corporation © Shimadzu Corporation, 2026 For Research Use Only. Not for use in diagnostic procedures. This publication may contain references to products that are not available in your country. Please contact us to check the availability of these products in your country. The content of this publication shall not be reproduced, altered or sold for any commercial purpose without the written approval of Shimadzu. See https://www.shimadzu.com/about/trademarks/index.html for details. Third party trademarks and trade names may be used in this publication to refer to either the entities or their products/services, whether or not they are used with trademark symbol “TM” or “”. Shimadzu disclaims any proprietary interest in trademarks and trade names other than its own. The information contained herein is provided to you "as is" without warranty of any kind including without limitation warranties as to its accuracy or completeness. Shimadzu does not assume any responsibility or liability for any damage, whether direct or indirect, relating to the use of this publication. This publication is based upon the information available to Shimadzu on or before the date of publication, and subject to change without notice. First Edition: Jul. 2026 01-01203-EN Nexera and Shim-pack Velox are trademarks of Shimadzu Corporation or its affiliated companies in Japan and/or other countries. 115.3 103.5 117.8 87.8 72.4 116.0 85.5 106.1 118.1 108.9 104.9 115.0 108.5 106.9 118.1 119.6 117.6 119.4 113.9 0.0 10.0 20.0 30.0 40.0 50.0 60.0 70.0 80.0 90.0 100.0 110.0 120.0 Compounds Calibration range ng/mL Correlation coefficient R NQ 1.0 – 1000 0.9965 1-MNG 1.0 – 1000 0.9996 1,2-DNG 1.0 – 1000 0.9996 HMX 1.0 – 1000 0.9998 PA 1.0 – 1000 0.9991 RDX 1.0 – 1000 0.9978 HMTD 1.0 – 1000 0.9973 NG 1.0 – 1000 0.9998 3,5-DNA 1.0 – 1000 0.9983 Summary In this study, we developed a rapid LC-MS/MS method for the simultaneous measurement of positive and negative ions for 19 explosives in soil. Nitrobenzenes, including their regioisomers, could be detected within approximately 5 min under optimized LC conditions. In addition, optimized MS conditions provided high sensitivity for nitrate esters, which are particularly prone to thermal decomposition. As a result, 17 of the 19 target compounds, including thermally labile compounds, were detectable at 1.0 ng/mL. Furthermore, the results of intra-day variability tests using soil samples spiked to 10 ng/mL demonstrated that this method provides sufficient performance for soil analysis. <References> 1) U.S. EPA. 2006. "Method 8330B (SW-846): Nitroaromatics, Nitramines, and Nitrate Esters by High Performance Liquid Chromatography (HPLC)," Revision 2. Washington, DC. Compounds Calibration range ng/mL Correlation coefficient R 4A-2,6-DNT 1.0 – 1000 0.9994 2A-4,6-DNT 1.0 – 1000 0.9998 PETN 5.0 – 1000 0.9981 1,3-DNB 1.0 – 1000 0.9998 TATP 5.0 – 1000 0.9972 2,6-DNT 1.0 – 1000 0.9978 Tetryl 1.0 – 1000 0.9953 2,4-DNT 1.0 – 1000 0.9969 TNB 1.0 – 1000 0.9981 TNT 1.0 – 1000 0.9977 Fig. 6 Accuracy and Repeatability of Target Compounds in Spiked Soil Samples (n = 5) Table 4 Calibration Range and Linearity
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